PDBeurope/PDBe-MCP-ServersMCPMCP Server

PDBe-MCP-Servers

PDBe MCP Servers integrate Protein Data Bank Europe resources with LLMs via Model Context Protocol. Provides seamless access to protein structure data through API tools and graph database schema assistance for intelligent Cypher query generation, bridging structural biology and AI research.

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Python

ai-integrationapi-serverbioinformaticsknowledge-graphllm-toolsmcppdbeprotein-structurespythonstructural-biology

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InstallMCPRun via uvx (Python)

Universal installANY TOOL

$ npx skillcity@latest PDBeurope/PDBe-MCP-Servers

Auto-detects the skill or MCP server in this repo and installs it for Claude Code, Codex, Cursor or Cline.

Requires Node.js 18+ (ships with npx).

Or install manually

uvx pdbe-mcp-servers

MCP Configuration

Add this to your claude_desktop_config.json

{
  "mcpServers": {
    "pdbe-mcp-servers": {
      "command": "uvx",
      "args": [
        "pdbe-mcp-servers"
      ]
    }
  }
}

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Discover the toolingbehind modern intelligence

PDBe-MCP-Servers